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1 Tree was published in this study

Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data.
Hughes et al. (2018). Proc Natl Acad Sci U S A.
Xenopus tropicalis Protopterus aethiopicus Latimeria chalumnae Polypterus endlicherii Polypterus bichir Erpetoichthys calabaricus Acipenser sinensis Acipenser naccarii Polyodon spathula Lepisosteus platyrhincus Lepisosteus oculatus Atractosteus spatula Amia calva Kaupichthys hyoproroides Gymnothorax reevesii Anguilla anguilla Anguilla rostrata Anguilla japonica Conger cinereus Megalops cyprinoides Osteoglossum bicirrhosum Scleropages formosus Mormyrus tapirus Gnathonemus petersii Papyrocranus afer Pantodon buchholzi Engraulis encrasicolus Coilia nasus Alosa alosa Amblygaster clupeoides Clupea harengus Homatula potanini Misgurnus anguillicaudatus Sinibotia superciliaris Leuciscus waleckii Pimephales promelas Tinca tinca Sinocyclocheilus grahami Sinocyclocheilus anshuiensis Sinocyclocheilus rhinocerous Cyprinus carpio Danio rerio Gyrinocheilus aymonieri Erythrinus erythrinus Hepsetus odoe Pygocentrus nattereri Thayeria boehlkei Hemigrammus bleheri Astyanax mexicanus Gasteropelecus sp. Distichodus sexfasciatus Electrophorus electricus Rhamphichthys rostratus Apteronotus albifrons Corydoras julii Pterygoplichthys pardalis Ictalurus punctatus Silurus asotus Pangasianodon hypophthalmus Glyptothorax sinensis Liobagrus styani Hemibagrus guttatus Plotosus lineatus Chanos chanos Esox lucius Umbra pygmaea Thymallus thymallus Coregonus clupeaformis Oncorhynchus mykiss Salvelinus fontinalis Salmo salar Galaxias maculatus Galaxiella nigrostriata Plecoglossus altivelis Protosalanx hyalocranius Osmerus eperlanus Borostomias antarcticus Argentina sp. CUR14063.G Parasudis fraserbrunneri Chlorophthalmus agassizi Synodus intermedius Percopsis transmontana Percopsis omiscomaycus Typhlichthys subterraneus Cyttopsis sp. CUR14111.G Cyttopsis rosea Zeus faber Merluccius merluccius Merluccius capensis Merluccius polli Trachyrincus scabrus Trachyrincus murrayi Muraenolepis marmoratus Melanonus zugmayeri Mora moro Laemonema laureysi Malacocephalus occidentalis Macrourus berglax Bathygadus melanobranchus Phycis blennoides Phycis phycis Trisopterus minutus Gadiculus argenteus Merlangius merlangus Melanogrammus aeglefinus Boreogadus saida Arctogadus glacialis Gadus chalcogrammus Gadus morhua Pollachius virens Brosme brosme Molva molva Lota lota Bregmaceros cantori Stylephorus chordatus Polymixia japonica Regalecus glesne Lampris guttatus Acanthochaenus luetkenii Rondeletia loricata Beryx splendens Monocentris japonicus Myripristis jacobus Myripristis berndti Neoniphon vexillarium Neoniphon sammara Holocentrus rufus Sargocentron rubrum Carapus acus Lamprogrammus exutus Brotula barbata Porichthys notatus Batrachomoeus trispinosus Chatrabus melanurus Phaeoptyx conklini Apogon cathetogrammus Periophthalmodon schlosseri Periophthalmus magnuspinnatus Boleophthalmus pectinirostris Scartelaos histophorus Coryphopterus lipernes Lesueurigobius sanzi Istigobius decoratus Exyrias puntang Glossogobius aureus Nomeus gronovii Pampus argenteus Thunnus albacares Thunnus orientalis Scomber scombrus Scomberomorus regalis Aulostomus maculatus Aulostomus sp. CUR14037.G Syngnathus scovelli Hippocampus erectus Syngnathoides biaculeatus Foetorepus agassizii Parupeneus indicus Chaenocephalus aceratus Gymnodraco acuticeps Notothenia coriiceps Lepidonotothen nudifrons Pronotogrammus martinicensis Chrionema squamentum Perca fluviatilis Cottus rhenanus Myoxocephalus scorpius Cyclopterus lumpus Gasterosteus aculeatus Anoplopoma fimbria Peristedion brevirostre Sebastes nigrocinctus Sebastes rubrivinctus Sebastes norvegicus Pontinus castor Dendrochirus zebra Synanceia verrucosa Scorpaenopsis cirrosa Lateolabrax maculatus Epigonus sp. CUR14046.G Eucinostomus jonesii Gerres filamentosus Scarus ghobban Scarus iseri Labrus bergylta Symphodus melops Thalassoma bifasciatum Parapercis xanthozona Terapon jarbua Oplegnathus punctatus Siniperca scherzeri Coreoperca whiteheadi Micropterus floridanus Amblycirrhitus pinos Dicentrarchus labrax Morone saxatilis Chaetodipterus faber Drepane punctata Lutjanus fulviflamma Lutjanus sebae Datnioides microlepis Haemulon flavolineatum Brachygenys chrysargyreum Miichthys miiuy Larimichthys crocea Equetus punctatus Chaetodon auriga Photopectoralis bindus Pomacanthus paru Acanthurus tractus Acanthopagrus schlegelii Acanthopagrus latus Spondyliosoma cantharus Evynnis cardinalis Siganus guttatus Priacanthus tayenus Antigonia capros Chaunax pictus Antennarius striatus Lactoria cornuta Ostracion rhinorhynchos Takifugu rubripes Takifugu flavidus Tetraodon nigroviridis Diodon holocanthus Mola mola Pseudobalistes fuscus Mastacembelus armatus Macrognathus aculeatus Monopterus albus Channa gachua Channa argus Channa micropeltes Helostoma temminkii Anabas testudineus Osphronemus goramy Lates calcarifer Centropomus undecimalis Trachinotus ovatus Coryphaena hippurus Selene dorsalis Caranx ignobilis Seriola lalandi Solea ovata Cynoglossus semilaevis Hippoglossus hippoglossus Pseudopleuronectes yokohamae Paralichthys olivaceus Scophthalmus maximus Polynemus dubius Toxotes jaculatrix Mugil cephalus Liza haematocheila Parambassis pulcinella Dascyllus trimaculatus Chromis chromis Amphiprion melanopus Stegastes partitus Pseudochromis fuscus Tomicodon sp. CUR14110.G Acyrtus rubiginosus Parablennius parvicornis Acanthemblemaria spinosa Enneanectes sp. CUR14108.G Opistognathus aurifrons Lipogramma evides Amphilophus citrinellus Parachromis managuensis Melanochromis auratus Rhamphochromis esox Labeotropheus fuelleborni Mchenga conophoros Maylandia zebra Pundamilia nyererei Haplochromis burtoni Neolamprologus brichardi Oreochromis niloticus Oryzias mekongensis Oryzias latipes Hyporhamphus intermedius Melanotaenia praecox Glossolepis incisus Pseudomugil paskai Odontesthes bonariensis Basilichthys microlepidotus Menidia menidia Nothobranchius furzeri Pachypanchax sakaramyi Austrofundulus limnaeus Kryptolebias marmoratus Aplocheilus lineatus Cyprinodon nevadensis pectoralis Cyprinodon variegatus Fundulus heteroclitus Ameca splendens Poecilia reticulata Poecilia formosa Xiphophorus maculatus Xiphophorus couchianus Xiphophorus hellerii Gambusia affinis Poeciliopsis prolifica Benthosema glaciale Guentherus altivela Lepidogalaxias salamandroides
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